Welcome to Counter RNAseq Window’s documentation!¶
User Guide¶
Developer Guide¶
Overview¶
Scripts are located in bin directory, and use some modules located in craw directory.
craw_coverage use module
craw.annotation
to handle annotation file and modulecraw.coverage
to compute coverage this module rely on pysam.craw_htmp read coverage file generate by craw_coverage and produce graphical representation of data. This script use functions in module
craw.heatmap
in the form of heatmap. The modulecraw.heatmap
have some capabilities to sort, crop, normalize data before represent them. this module rely on numpy, pandas to manipulate data (craw.heatmap.sort
,craw.heatmap.crop_matrix
,craw.heatmap.lin_norm
, …) and matplotlib and/or pillow to generate images (craw.heatmap.draw_heatmap
,craw.heatmap.draw_raw_image
)